Package: arbor 1.1.5

Jean-Romain Roussel

arbor: Tree Segmentation in MLS/TLS Point Clouds

Semantic segmentation, instance segmentaion and Quantitative Structure Model in MLS and TLS Point Clouds.

Authors:Jean-Romain Roussel

arbor_1.1.5.tar.gz
arbor_1.1.5.zip(r-4.7-x86_64)arbor_1.1.5.zip(r-4.7-arm64)arbor_1.1.5.zip(r-4.6-x86_64)arbor_1.1.5.zip(r-4.6-arm64)arbor_1.1.5.zip(r-4.5-x86_64)
arbor_1.1.5.tgz(r-4.6-x86_64)arbor_1.1.5.tgz(r-4.6-arm64)arbor_1.1.5.tgz(r-4.5-x86_64)arbor_1.1.5.tgz(r-4.5-arm64)
arbor_1.1.5.tar.gz(r-4.7-arm64)arbor_1.1.5.tar.gz(r-4.7-x86_64)arbor_1.1.5.tar.gz(r-4.6-arm64)arbor_1.1.5.tar.gz(r-4.6-x86_64)
arbor_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
arbor/json (API)

# Install 'arbor' in R:
install.packages('arbor', repos = c('https://r-lidar.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r-lidar/arbor/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

forest-inventoryforestrylidarmobile-laser-scanningqsmsegmentationcppopenmp

6.09 score 61 stars 52 scripts 61 exports 50 dependencies

Last updated from:a2b487f4a2. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK430
linux-devel-x86_64OK513
source / vignettesOK483
linux-release-arm64OK414
linux-release-x86_64OK527
macos-release-arm64OK477
macos-release-x86_64OK703
macos-oldrel-arm64OK427
macos-oldrel-x86_64OK942
windows-devel-arm64OK620
windows-devel-x86_64OK598
windows-release-arm64OK652
windows-release-x86_64OK548
windows-oldrel-x86_64OK550
wasm-releaseOK298

Exports:%in%add_dbh3dadd_rangeadd_single_tree_groundarbor_parameters_defaultARBORBUFFERARBORLOWARBORTREEARBORUNDERSTORYavailable_allometriescolorize_treesextract_tree_contextfilter_rangefind_seedsflag_bufferflag_small_treesfoliage.colorshybrid_homogeneizationinstall_cmd_toolsplot_instanceplot_likelihoodplot_passageplot_qsmplot_semanticplot_semantic_instanceqsfqsf_filterqsf_filter_brokenqsf_filter_errorsqsf_filter_flaggedqsf_filter_messagesqsf_filter_nomeasureqsf_filter_okqsf_filter_saplingqsf_filter_warningsqsf_logqsf_merchantableqsf_readqsf_segment_semanticqsf_treemapqsf_writeqsmqsm_dbhqsm_heightqsm_merchantableqsm_messageqsm_nostumpqsm_readqsm_statsqsm_stemqsm_treeidqsm_volumeqsm_writeread_trajectoryresolve_oversegmentationsegment_groundsegment_instancesegment_semanticst_crstransfer_attributeswood_likelihood

Dependencies:abindbase64encBHbslibcachemclassclassIntclidata.tableDBIdigeste1071evaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteKernSmoothknitrlazyevallidRlifecyclemagrittrmemoisemimeparallellyproxyR6rappdirsRcppRcppArmadillorglrlangrlasrmarkdowns2sasssfstarsterratinytexunitswkxfunyaml

Readme and manuals

Help Manual

Help pageTopics
Subset a qsf object[.qsf
Value Matching for 'qsf' Objects%in%,LAS-method
Adds a set of synthetic ground points below a single-tree point cloud. Useful to perform arbor operations on already externally isolated treesadd_single_tree_ground
ConstantsARBORBUFFER ARBORLOW ARBORTREE ARBORUNDERSTORY
Available allometric modelsavailable_allometries
Extract the local tree context from a LAS objectextract_tree_context
Find seeds to perform instance segmentationfind_seeds
Flag Trees for Exclusionflagging flag_buffer flag_small_trees
Color palette for semantic segmentation plotfoliage.colors
Homogenization of the Point Cloudhybrid_homogeneization
Use some arbor features from a terminalinstall_cmd_tools
Parametersarbor_parameters_default parameters
Plot QSM Data in 3Dcolorize_trees plot.qsf plot.qsm plot_instance plot_likelihood plot_passage plot_qsm plot_semantic plot_semantic_instance
Print a Quantitative Structure Forest (QSF)print.qsf
Print a Quantitative Structure Model (QSM)print.qsm
Quantitative Structural Forestqsf
Filter a qsf objectqsf_filter qsf_filter_broken qsf_filter_errors qsf_filter_flagged qsf_filter_messages qsf_filter_nomeasure qsf_filter_ok qsf_filter_sapling qsf_filter_warnings
QSF logprint.qsf_log qsf_log
Read a QSF Manifest Fileqsf_read
Semantic segmentation of a tree point cloud using a QSMqsf_segment_semantic
Convert a Quantitative Structure Forest (QSF) to an sf treemapqsf_treemap
Write a QSF to Filesqsf_write
Generate a QSM from a single tree point cloudqsm
Extract diameter at breast height (DBH) from a QSMadd_dbh3d qsm_dbh
Read QSM Data from Fileqsm_read
Compute summary statistics from a QSMqsm_stats
Subset a QSM or QSFqsf_merchantable qsm_merchantable qsm_nostump qsm_stem qsm_subset
Simple tools for QSMqsm_height qsm_message qsm_treeid qsm_treeid.qsf qsm_treeid.qsm qsm_volume
Write a QSM to Fileqsm_write
Resolve over-segmentation in a tree instance segmentationresolve_oversegmentation
Ground Segmentationsegment_ground
Individual Tree Instance Segmentationsegment_instance
Wood-Foliage Semantic Segmentationsegment_semantic
Get or set the projection of a QSM and QSF objectsst_crs st_crs.qsf st_crs.qsm st_crs<-.qsf st_crs<-.qsm
Transform the coordinates of a QSM or a QSF to a new CRSst_transform st_transform.qsf st_transform.qsm
Trajectory-based range filtering utilitiesadd_range filter_range read_trajectory trajectory_range
Transfer attributes between point cloudstransfer_attributes
Compute Local Wood Likelihoodwood_likelihood